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Copepoda of the US-NE-LME

There are 174 species of Copepoda that are commonly found in the US-NE-LME.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A		 All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 174 total species, 118 of these species (67%) have COI barcodes (from this or any ocean).
  • There are a total of 7335 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
    • MODE
    B    		 Regional COI barcodes for this taxa group (includes only those collected in the US-NE-LME region):
  • Of the 174 total species, 23 of these species (13%) have US-NE-LME-collected COI barcodes.
  • There are a total of 144 "US-NE-LME-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
    • Uncoded
    Species    		 Of the 174 total species in this region, 56 species do not have any COI barcodes (from any region).

     Barcoding progress summary for the US-NE-LME region, out of a total of 174 possible species:
    • There are COI barcodes for 118 species ( 67% coverage ), of which 23 species have barcodes sampled inside this region ( 13% coverage ).
      •
    • There are 12S barcodes for 23 species ( 13% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 52 species ( 29% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 105 species ( 60% coverage ), of which 3 species have barcodes sampled inside this region ( 1% coverage ).
    • There are 28S barcodes for 82 species ( 47% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    Change Region   [ ICES North Atlantic ] [ Baltic Sea ] [ Mediterranean Sea ]
          [ ICES western North Atlantic ] [ US-NE-LME ] [ CA-Scotian ] [ CA-GSL ] [ CA-Newfoundland-shelf ]
          [ ICES eastern North Atlantic ] [ Icelandic-Waters ] [ Faroe-Islands ] [ Norwegian-Sea ] [ Barents-Sea ] [ Celtic-Seas ] [ North-Sea ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Copepoda of the US-NE-LME
    MZGdb DATA FILES

    Database-Version:   v2023-m04-01    		 --->   Mode-A   <---

    COI barcodes = 7335
    12S barcodes = 31
    16S barcodes = 1983
    18S barcodes = 326
    28S barcodes = 391
    		 Mode-B

    COI barcodes = 144
    12S barcodes = 0
    16S barcodes = 10
    18S barcodes = 9
    28S barcodes = 2
    		 Mode-C

    COI records = 8286
    12S records = 40
    16S records = 2075
    18S records = 427
    28S records = 443
    		 Mode-D

    COI records = 161
    12S records = 0
    16S records = 10
    18S records = 13
    28S records = 2
    FASTA file MZGdb fasta (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb fasta (mode-B)
    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb fasta (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb fasta (mode-D)
    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)    		 MZGdb Mothur (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb Mothur (mode-B)
    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb Mothur (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb Mothur (mode-D)
    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description    		CSV

    Excel-friendly full format
    comma-separated-values    		 MZGdb CSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb CSV (mode-B)
    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb CSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb CSV (mode-D)
    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    PSV

    pipe-separated-values    		 MZGdb PSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb PSV (mode-B)
    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb PSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb PSV (mode-D)
    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)


    MZGdb Atlas [ database-version = v2023-m04-01 ];   html-date = 2023-Apr-12









    Wed Apr 12 16:35:09 EDT 2023